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Pedro Manuel Silva

Post-Doc Researcher

Publications

8 Publications

Fan Z*, Silva P*, Gronau I, Wang S, Armero AS, Schweizer RM, Ramirez O, Pollinger J, Galaverni M, Del-Vecchyo DO, Du L, Zhang W, Zhang Z, Xing J, Vilà C, Marques-Bonet T, Godinho R, Yue B, Wayne RK (2016) Worldwide patterns of genomic variation and admixture in gray wolves. Genome Research, 26(2): 163-173. doi: 10.1101/gr.197517.115 Open publication

Freedman AH, Schweizer RM, Ortega-Del Vecchyo D, Han EJ, Davis BW, Gronau I, Silva PM, Galaverni M, Fan ZX, Marx P, Lorente-Galdos B, Ramirez O, Hormozdiari F, Alkan C, Vila C, Squire K, Geffen E, Kusak J, Boyko AR, Parker HG, Lee C, Tadigotla V, Siepel A, Bustamante CD, Harkins TT, Nelson SF, Marques-Bonet T, Ostrander EA, Wayne RK, Novembre J (2016) Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs. Plos Genetics, 12(3): 5851-5851. doi: 10.1371/journal.pgen.1005851 Open publication

Schweizer RM, Robinson J, Harrigan R, Silva P, Galverni M, Musiani M, Green RE, Novembre J, Wayne RK (2016) Targeted capture and resequencing of 1040 genes reveal environmentally driven functional variation in grey wolves. Molecular Ecology, 25(1): 357-379. doi: 10.1111/mec.13467 Open publication

Godinho R, López-Bao JV, Castro D, Llaneza L, Lopes S, Silva P, Ferrand N (2015) Real-time assessment of hybridization between wolves and informative markers. Molecular Ecology Resources, 15(2): 317–328. doi: 10.1111/1755-0998.12313 Open publication

Koepfli K-P, Pollinger J, Godinho R, Robinson J, Lea A, Hendricks S, Schweizer RM, Thalmann O, Silva P, Fan Z, Yurchenko AA, Dobrynin P, Makunin A, Cahill JA, Shapiro B, Álvares F, Brito JC, Geffen E, Leonard JA, Helgen KM, Johnson WE, O’Brien SJ, Van Valkenburgh B, Wayne RK (2015) Genome-wide evidence reveals that African and Eurasian Golden Jackals are distinct species. Current Biology, 25(16): 2158-2165. doi: 10.1016/j.cub.2015.06.060 Open publication

Fan Z, Zhao G, Li P, Osada N, Xing J, Yi Y, Du L, Silva P, Wang H, Sakate R, Zhang X, Xu H, Yue B , Li J (2014) Whole-Genome Sequencing of Tibetan Macaque (Macaca thibetana) Provides New Insight into the Macaque Evolutionary History. Molecular Biology and Evolution, 31: 1475-1489. doi: 10.1093/molbev/msu104 Open publication

Freedman AH, Gronau I, Schweizer RM, Ortega-Del Vecchyo D, Han E, Silva PM, Galaverni M, Fan Z, Marx P, Lorente-Galdos B, Beale H, Ramirez O, Hormozdiari F, Alkan C, Vila C, Squire K, Geffen E, Kusak J, Boyko AR, Parker HG, Lee C, Tadigotla V, Siepel A, Bustamante CD, Harkins TT, Nelson SF, Ostrander EA, Marques-Bonet T, Wayne RK, Novembre J (2014) Genome Sequencing Highlights the Dynamic Early History of Dogs. Plos Genetics, 10: e1004016. doi: 10.1371/journal.pgen.1004016 Open publication

Zhang W, Fan Z, Han E, Hou R, Zhang L, Galaverni M, Huang J, Liu H, Silva P, Li P, Pollinger JP, Du L, Zhang X, Yue B, Wayne RK, Zhang Z (2014) Hypoxia Adaptations in the Grey Wolf (Canis lupus chanco) from Qinghai-Tibet Plateau. Plos Genetics, 10(7): e1004466. doi: 10.1371/journal.pgen.1004466 Open publication

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