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Miguel Jorge Pinto Carneiro

Principal Researcher

Publications

50 Publications

Andrade, P, Pinho, C, Perez i de Lanuza, G, Afonso, S, Brejcha, J, Rubin, CJ, Wallerman, O, Pereira, P, Sabatino, SJ, Bellati, A, Pellitteri-Rosa, D, Bosakova, Z, Bunikis, I, Carretero, MA, Feiner, N, Marsik, P, Pauperio, F, Salvi, D, Soler, L, While, GM , Uller, T, Font, E, Andersson, L & Carneiro, M (2019). Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard. Proceedings of the National Academy of Sciences, 116(12), 5633-5642. doi: 10.1073/pnas.1820320116 Open publication

Cardoso-Moreira, M.; Halbert, J.; Valloton, D.; Velten, B.; Chen, C.; Shao, Y.; Liechti, A.; Ascenção, K.; Rummel, C.; Ovchinnikova, S.; Mazin, PV.; Xenarios, I.; Harshman, K.; Mort, M.; Cooper, DN.; Sandi, C.; Soares, MJ.; Ferreira, PG.; Afonso, S.; Carneiro, M.; Turner, JMA.; VandeBerg, JL.; Fallahshahroudi, A.; Jensen, P.; Behr, R.; Lisgo, S.; Lindsay, S.; Khaitovich, P.; Huber, W.; Baker, J.; Anders, S.; Zhang, YE.; Kaessmann, H. (2019). Gene expression across mammalian organ development. Nature 571, 505-509. doi: 10.1038/s41586-019-1338-5 Open publication

Koepfli KP;Tamazian G; Wildt D; Dobrynin P; Kim C; Frandsen PB; Godinho R;Yurchenko AA; Komissarov A; Krasheninnikova K; Kliver S; Kolchanova S; Gonçalves M; Carneiro M; Pinto PV; Ferrand N; Maldonado JE; Ferrie GM; Chemnick L; Ryder OA; Johnson WE; Comizzoli P; O'Brien SJ; Pukazhenthi BS (2019). Whole genome sequencing and re-sequencing of the sable antelope (Hippotragus niger): a resource for monitoring diversity in ex situ and in situ populations. G3: Genes, Genomes, Genetics 9, 1785-1793. doi: 10.1534/g3.119.400084 Open publication

Marchandeau, S, Queney, G, Alves, JM, Carneiro, M, & Ferrand, N (2019). Myxomatosis: rabbits have separately developed the same mechanisms of genetic resistance in France, Australia and the United Kingdom. Medecine sciences 2019: M/S, 35(8-9), 611. doi: 10.1051/medsci/2019118 Open publication

Pina-Cabral, LB; Carneiro, M; Criado, B; Esteves, PJ (2019). Maximum likelihood approach suggests positive selection in platelet integrin ?IIb?3 in mammalian species. Platelets 30:4, 460-466. doi: 10.1080/09537104.2018.1457783 Open publication

Gazda MA, Andrade P, Afonso S, Dilytė J, Archer J, Lopes RJ, Faria R, Carneiro M (2018) Signatures of Selection on Standing Genetic Variation Underlie Athletic and Navigational Performance in Racing Pigeons. Molecular Biology and Evolution, 35(5):1176–1189 doi: 10.1093/molbev/msy030 Open publication

Makino T, Rubin CJ, Carneiro M, Axelsson E, Andersson L, Webster MT (2018) Elevated Proportions of Deleterious Genetic Variation in Domestic Animals and Plants. GGenome Biology and Evolution, 10(1): 276-290. doi: 10.1093/gbe/evy004 Open publication

Rafati N, Blanco-Aguiar JA, Rubin CJ, Sayyab S, Sabatino SJ, Afonso S, Feng CG, Alves PC, Villafuerte R, Ferrand N, Andersson L, Carneiro M (2018) A genomic map of clinal variation across the European rabbit hybrid zone. Molecular Ecology, 27(6): 1457-1478. doi: 10.1111/mec.14494 Open publication

Carneiro M, Hu D, Archer J, Feng C, Afonso S, Chen C, Blanco-Aguilar JA, Garreau H, Boucher S, Ferreira PG, Ferrand N, Rubin CJ, Andersson L (2017) Dwarfism and Altered Craniofacial Development in Rabbits Is Caused by a 12.1 kb Deletion at the HMGA2 Locus. Genetics. doi: 10.1534/genetics.116.196667 Open publication

Lopes RJ, Merida AM, Carneiro M (2017) Unleashing the Potential of Public Genomic Resources to Find Parasite Genetic Data. Trends in Parasitology, 33(10): 750-753. doi: 10.1016/j.pt.2017.06.006 Open publication

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