• Research Center in Biodiversity and Genetic Resources

    InBIO Associate Laboratory

    Research Center in  Biodiversity and Genetic Resources
  • Research Center in Biodiversity and Genetic Resources

    InBIO Associate Laboratory

    Research Center in  Biodiversity and Genetic Resources
  • Research Center in Biodiversity and Genetic Resources

    InBIO Associate Laboratory

    Research Center in  Biodiversity and Genetic Resources
  • Research Center in Biodiversity and Genetic Resources

    InBIO Associate Laboratory

    Research Center in  Biodiversity and Genetic Resources
 
 

 

 

 
John Archer
 

Publications

 
Year:  
Type:  
 
 
 
Articles in SCI journals
Year: 2016
 
Carneiro M, Hu D, Archer J, Feng C, Afonso S, Chen C, Blanco-Aguilar JA, Garreau H, Boucher S, Ferreira PG, Ferrand N, Rubin CJ, Andersson L (2016) Dwarfism and Altered Craniofacial Development in Rabbits Is Caused by a 12.1 kb Deletion at the HMGA2 Locus. Genetics.
 
Lorenzo-Redondo R, Fryer HR, Bedford T, Kim EY, Archer J, Pond SLK, Chung YS, Penugonda S, Chipman JG, Fletcher CV, Schacker TW, Malim MH, Rambaut A, Haase AT, McLean AR, Wolinsky SM (2015) Persistent HIV-1 replication maintains the tissue reservoir during therapy. Nature, 530: 51-56.
 
 
Articles in SCI journals
Year: 2014
 
Archer JP, Whiteley G, Casewell NR, Harrison RA, Wagstaff SC (2014) VTBuilder: a tool for the assembly of multi isoform transcriptomes. BMC Bioinformatics, 15(1):389.
 
Gibson RM, Meyer AM, Winner D, Archer J, Feyertag F, Ruiz-Mateos E, Leal M, Robertson DL, Schmotzer CL, Quiñones-Mateu ME (2014) Sensitive deep-sequencing-based HIV-1 genotyping assay to simultaneously determine susceptibility to protease, reverse transcriptase, integrase, and maturation inhibitors, as well as HIV-1 coreceptor tropism. Antimicrob Agents Chemother, 58(4):2167-85.
 
Kim EY, Lorenzo-Redondo R, Little SJ, Chung YS, Phalora PK, Maljkovic Berry I, Archer J, Penugonda S, Fischer W, Richman DD, Bhattacharya T, Malim MH, Wolinsky SM (2014) Human APOBEC3 induced mutation of human immunodeficiency virus type-1 contributes to adaptation and evolution in natural infection. PLoS Pathog, 10(7):e1004281.
 
 
Articles in SCI journals
Year: 2013
 
Weber J, Vazquez AC, Winner D, Gibson RM, Rhea AM, Rose JD, Wylie D, Henry K, Wright A, King K, Archer J, Poveda E, Soriano V, Robertson DL, Olivo PD, Arts EJ, Quiones-Mateu ME (2013) Sensitive cell-based assay for determination of human immunodeficiency virus type 1 coreceptor tropism. Jornal Clinical Microbiology, 51(5):1517-1527.
 
 
Articles in SCI journals
Year: 2012
 
Archer J, Baillie G, Watson SJ, Kellam P, Rambaut A, Robertson DL (2012) Analysis of high-depth sequence data for studying viral diversity: a comparison of next generation sequencing platforms using Segminator II. BMC Bioinformatics, 13(1):47.
 
Archer J, Weber J, Henry K, Winner D, Gibson R, Lee L, Paxinos E, Arts EJ, Robertson DL, Mimms L, Quiñones-Mateu ME (2012) Use of Four Next-Generation Sequencing Platforms to Determine HIV-1 Coreceptor Tropism. PLoS ONE, 7(11): e49602.
 
 
Articles in SCI journals
Year: 2011
 
Williams SG, Madan R, Norris MG, Archer J, Mizuguchi K, Robertson DL, Lovell, SC (2011) Using knowledge of protein structural constraints to predict the evolution of HIV-1. Journal of Molecular Biology, 410(5):1023-1034.