• Research Center in Biodiversity and Genetic Resources

    InBIO Associate Laboratory

    Research Center in  Biodiversity and Genetic Resources
  • Research Center in Biodiversity and Genetic Resources

    InBIO Associate Laboratory

    Research Center in  Biodiversity and Genetic Resources
  • Research Center in Biodiversity and Genetic Resources

    InBIO Associate Laboratory

    Research Center in  Biodiversity and Genetic Resources
  • Research Center in Biodiversity and Genetic Resources

    InBIO Associate Laboratory

    Research Center in  Biodiversity and Genetic Resources
 
Year:  
Type:  
 
Articles in SCI journals
Year: 2021
 
Andrade P, Cataldo D, Fontaine R, Rodrigues TM, Queirós J, Neves V, Fonseca A, Carneiro M, Gonçalves D (2021). Selection underlies phenotypic divergence in the insular Azores woodpigeon. Zoologica Scripta, 50(1), 1-15.
 
Andrade, P., Gazda, M. A., Araújo, P. M., Afonso, S., Rasmussen, J. A., Marques, C. I., ... & Carneiro, M. (2021). Molecular parallelisms between pigmentation in the avian iris and the integument of ectothermic vertebrates. PLoS genetics, 17(2), e1009404.
 
Carneiro, M., Vieillard, J., Andrade, P., Boucher, S., Afonso, S., Blanco-Aguiar, J. A., ... & Andersson, L. (2021). A loss-of-function mutation in RORB disrupts saltatorial locomotion in rabbits. PLoS genetics, 17(3), e1009429.
 
E.L. Koch, H. Morales, J. Larsson, A.M. Westram, R. Faria, A.R. Lemmon, E.M. Lemmon, K. Johannesson, R.K. Butlin. Genetic variation for adaptive traits is associated with polymorphic inversions in Littorina saxatilis. Evolution Letters 5, 196-213
 
Faria R, Johannesson, J, Stankowski S. (2021) Speciation in marine environments: diving under the surface. Journal of Evolutionary Biology 4-15.
 
Galindo J, Carvalho J, Sotelo G, Duvetorp M, Costa D, Kemppainen K, Panova M, Kaliontzopoulou A, Johannesson K, Faria R. (2021) Genetic and morphological divergence between Littorina fabalis ecotypes in Northern Europe. Journal of Evolutionary Biology 34, 97-113.
 
M. Rafajlović, J. Rambla, J. Feder, A. Navarro, R. Faria. Assessing the role of inversions in maintaining genomic differentiation after secondary contact: local adaptation, genetic incompatibilities, and drift. Evolution 75, 1288-1303.
 
Norte AC, Araújo PM, Augusto L, Guímaro H, Santos S, Lopes RJ, Núncio MS, Ramos JA, Lopes de Carvalho I. (2021) Effects of stress exposure in captivity on physiology and infection in avian hosts: no evidence of increased Borrelia burgdorferi s.l. infectivity to vector ticks. Microbial Ecology
 
Westram AM, Faria R, Butlin RK, Johannesson K. Using replicate hybrid zones to understand the genomic basis of adaptive divergence. Molecular Ecology.
 
Articles in SCI journals
Year: 2020
 
Cantarero A, Andrade P, Carneiro M, Moreno-Borrallo A, Alonso-Alvarez C (2020). Testing the carotenoid-based sexual signalling mechanism by altering CYP2J19 gene expression and colour in a bird species. Proceedings of the Royal Society B, 287(1938): 20201067.
 
Cerveira LR, Ramos JA, Rodrigues I, Almeida N, Araújo PM, Dos Santos I, Vieira C, Pereira JM, Ceia FR, Gerades, P, Melo T, Paiva VH (2020). Inter-annual changes in oceanic conditions drives spatial and trophic consistency of a tropical marine predator. Marine Environmental Research, 162: 105165.
 
Costa D, Sotelo G, Kaliontzopoulou A, Carvalho J, Butlin R, Hollander J, Faria R (2020). Hybridization patterns between two marine snails, Littorina fabalis and L. obtusata. Ecology and evolution, 10(3): 1158-1179.
 
Costa JS, Hahn S, Rocha AD, Araújo PM, Olano-Marín J, Emmenegger T, Alves JA (2020). The discriminant power of biometrics for sex determination in European Bee-eaters Merops apiaster. Bird Study: 1-10.
 
de Abreu MS, Maximino C, Cardoso SC, Marques CI, Pimentel AF, Mece E, Winberg S, Barcellos LJG, Soares MC (2020). Dopamine and serotonin mediate the impact of stress on cleaner fish cooperative behavior. Hormones and Behavior, 125: 104813.
 
Dilytė J, Sabatino S, Godinho R, Brito JC (2020). Diversification and gene flow of tilapia species driven by ecological changes in lowland and mountain areas of southern Mauritania. Evolutionary Ecology, 34(1): 133-146.
 
Estévez D, Kozminsky E, Carvajal-Rodríguez A. Caballero A, Faria R, Galindo J & Rolán-Alvarez E. (2020) Frequency-dependent sexual selection contributes to the maintenance of shell colour polymorphism in a marine snail by means of mate choice. Frontiers in Marine Science 7:614237.
 
Galindo J, Carvalho J, Sotelo G, Duvetorp M, Costa D, Kemppainen P, Panova M, Kaliontzopoulou A, Johannesson K, Faria R (2020). Genetic and morphological divergence between Littorina fabalis ecotypes in Northern Europe. Journal of Evolutionary Biology 34, 97-113.
 
Gazda MA, Araújo PM, Lopes RJ, Toomey MB, Andrade P, Afonso S, Marques C, Nunes L, Pereira P, Trigo S, Hill GE, Corbo JC, Carneiro M (2020). A genetic mechanism for sexual dichromatism in birds. Science, 368(6496): 1270-1274.
 
Gazda MA, Toomey MB, Araújo PM, Lopes RJ, Afonso S, Myers CA, Serres K, Kiser PD, Hill GE, Corbo JC, Carneiro M (2020). Genetic basis of de novo appearance of carotenoid ornamentation in bare parts of canaries. Molecular Biology and Evolution, 37(5): 1317-1328.
 
Gomes ACR, Guerra S, Silva PA, Marques CI, Trigo S, Boogert NJ, Cardoso GC (2020). Proactive common waxbills make fewer mistakes in a cognitive assay, the detour-reaching task. Behavioral Ecology and Sociobiology, 74(3): 1-15.
 
Johannesson K, Zagrodzka Z, Faria R, Marie Westram A, Butlin RK (2020). Is embryo abortion a post‐zygotic barrier to gene flow between Littorina ecotypes? Journal of evolutionary biology, 33(3): 342-351.
 
Letko A, Ammann B, Jagannathan V, Henkel J, Leuthard F, Schelling C, Carneiro M, Drögemüller C, Leeb T (2020). A deletion spanning the promoter and first exon of the hair cycle‐specific ASIP transcript isoform in black and tan rabbits. Animal genetics, 51(1): 137-140.
 
Lilay GH, Castro PH, Guedes JG, Almeida DM, Campilho A, Azevedo H, Aarts MGM, Saibo NJM, Assuncao AGL (2020) Rice F-bZIP transcription factors regulate the zinc deficiency response. J Exp Bot 71: 3664-3677.
 
Lopes EP, Monteiro, N & Santos, AM (2020) Epibiotic assemblages on the pen shell Pinna rudis (Bivalvia, Pinnidae) at Matiota Beach, São Vicente Island, Cabo Verde. African Journal of Marine Science 42(1): 13–21.
 
Marques JP, Sotelo G, Galindo J, Chaube P, Costa D, Afonso S, Panova M, Nowick K, Butlin R, Hollander J, Faria R (2020). Transcriptomic resources for evolutionary studies in flat periwinkles and related species. Scientific data, 7(1): 1-11.
 
Moutinho AF, Serén N, Paupério J, Silva TL, Martínez-Freiría F, Sotelo G, Faria R, Mappes T, Alves PC, Brito JC, Boratyński Z (2020). Evolutionary history of two cryptic species of northern African jerboas. BMC evolutionary biology, 20(1): 1-16.
 
Norte AC, Carvalho IL, Núncio MS, Araujo PM, Matthysen E, Ramos JA, Sprong H, Heylen D. (2020). Getting under the birds’ skin: tissue tropism of Borrelia burgdorferi s.l. in naturally and experimentally infected avian hosts. Microbial Ecology 79(3):756-769.
 
Norte AC, Margos G, Becker NS, Albino Ramos J, Núncio MS, Fingerle V, Araujo PM, (…) Carvalho IL (2020). Host dispersal shapes the population structure of a tick‐borne bacterial pathogen. Molecular Ecology, 29(3): 485-501.
 
Sato DX, Rafati N, Ring H, Younis S, Feng C, Blanco-Aguiar JA, Rubin CJ, Villafuerte R, Hallböök, Carneiro M, Andersson L (2020). Brain Transcriptomics of Wild and Domestic Rabbits Suggests That Changes in Dopamine Signaling and Ciliary Function Contributed to Evolution of Tameness. Genome biology and evolution, 12(10): 1918-1928.
 
Silva PA, Trigo S, Marques CI, Cardoso GC, Soares MC (2020). Experimental evidence for a role of dopamine in avian personality traits. Journal of Experimental Biology: 223(3).
 
Sotelo G, Duvetorp M, Costa D, Panova M, Johannesson K, Faria R (2020). Phylogeographic history of flat periwinkles, Littorina fabalis and L. obtusata. BMC Evolutionary Biology, 20(1): 23.
 
Westram AM, Faria R, Butlin R, Johannesson K (2020). Inversions and Evolution. ELS, 1-9.
 
Articles in non-SCI journals
Year: 2020
 
Castro PH, Freitas S, Azevedo H (2020b) Plant hexokinase phylogenetic analysis highlights a possible regulation by the posttranslational modifier SUMO. MicroPubl Biol 2020.
 
Castro PH, Verde N, Azevedo H (2020a) Arabidopsis thaliana growth is independently controlled by the SUMO E3 ligase SIZ1 and Hexokinase 1. MicroPubl Biol 2020
 
Articles in SCI journals
Year: 2019
 
Alves JM, Carneiro M, Cheng JY, Matos AL, Rahman MM, Loog L, Campos PF, Wales N, Eriksson A, Manica A, Strive T, Graham SC, Afonso A, Bell DJ, Belmont L, Day JP, Fuller SJ, Marchandeau S, Palmer WJ, Queney G, Surridge AK, Vieira FG, McFadden G, Nielsen R, Gilbert MTP, Esteves PJ, Ferrand N, Jiggins FM: Parallel adaptation of rabbit populations to myxoma virus. Science 2019, 363(6433), 1319-1326.
 
Andrade, P., Pinho, C., i de Lanuza, G. P., Afonso, S., Brejcha, J., Rubin, C. J., ... & Carneiro, M. (2019). Regulatory changes in pterin and carotenoid genes underlie balanced color polymorphisms in the wall lizard. Proceedings of the National Academy of Sciences, 116(12), 5633-5642.
 
Cardoso-Moreira, M.; Halbert, J.; Valloton, D.; Velten, B.; Chen, C.; Shao, Y.; Liechti, A.; Ascenção, K.; Rummel, C.; Ovchinnikova, S.; Mazin, PV.; Xenarios, I.; Harshman, K.; Mort, M.; Cooper, DN.; Sandi, C.; Soares, MJ.; Ferreira, PG.; Afonso, S.; Carneiro, M.; Turner, JMA.; VandeBerg, JL.; Fallahshahroudi, A.; Jensen, P.; Behr, R.; Lisgo, S.; Lindsay, S.; Khaitovich, P.; Huber, W.; Baker, J.; Anders, S.; Zhang, YE.; Kaessmann, H. (2019). Gene expression across mammalian organ development. Nature 571, 505–509.
 
Covas R & Doutreland C (2019). Testing the Sexual and Social Benefits of Cooperation in Animals.Trends in Ecology and Evolution, 34(2): 112-120.
 
da Silva, LP.; Mata, VA.; Lopes, PB.; Pereira, P.; Jarman, SN.; Lopes, RJ.; Beja, P. (2019). Advancing the integration of multi‐marker metabarcoding data in dietary analysis of trophic generalists. Molecular Ecology Resources.
 
Faria R, Chaube P, Morales H, Larsson T, Lemmon AR, Lemmon EM, Rafajlovic M, Panova M, Ravinet M, Johannesson K, Westram AM, Butlin RK. (2019) Multiple chromosomal rearrangements in a hybrid zone between Littorina saxatilis ecotypes. Molecular Ecology 28, 1375-1393
 
Faria R, Johannesson K, Butlin R, Westram A. (2019) Evolving inversions. Trends in Ecology and Evolution 34, 239-248
 
Grashof, DGB.; Kerkkamp, HMI.; Afonso, S.; Archer, J.; Harris, DJ.; Richardson, MK.; Vonk, FJ.; van der Meijden, A. (2019). Transcriptome annotation and characterization of novel toxins in six scorpion species. BMC Genomics 20, 645.
 
Jowers, M. J., Sanchez-Ramirez, S., Lopes, S., Karyakin, I., Dombrovski, V., Qninba, A., Valkenburg, T., Onofre, N., Ferrand, N., Beja, P., Palma, L., & Godinho, R. (2019). Unravelling population processes over the Late Pleistocene driving contemporary genetic divergence in Palearctic buzzards. Molecular Phylogenetics and Evolution, 134, 269-281.
 
Koepfli KP;Tamazian G; Wildt D; Dobrynin P; Kim C; Frandsen PB; Godinho R;Yurchenko AA; Komissarov A; Krasheninnikova K; Kliver S; Kolchanova S; Gonçalves M; Carneiro M; Pinto PV; Ferrand N; Maldonado JE; Ferrie GM; Chemnick L; Ryder OA; Johnson WE; Comizzoli P; O'Brien SJ; Pukazhenthi BS (2019). Whole genome sequencing and re-sequencing of the sable antelope (Hippotragus niger): a resource for monitoring diversity in ex situ and in situ populations. G3: Genes, Genomes, Genetics 9, 1785–1793.
 
Kolora R, Tech M, Weigert A, Saffari A, Kehr S, Costa M, Spröer C, Indrischek H, Chintalapati M, Doose G, Bunk B, Overmann J, Lohse K, Bleidorn C, Henle K, Nowick K, Faria R, Stadler P, Schlegel M. (2019) Divergent evolution in the genomes of closely­ related lacertids, Lacerta viridis and L. bilineata and implications for speciation. GigaScience, 8(2), giy160.
 
Louro B, De Moro G, Garcia C, Cox CJ, Veríssimo A, Sabatino SJ, et al. A haplotype-resolved draft genome of the European sardine (Sardina pilchardus). GigaScience.
 
Marchandeau, S, Queney, G, Alves, JM, Carneiro, M, & Ferrand, N (2019). Myxomatosis: rabbits have separately developed the same mechanisms of genetic resistance in France, Australia and the United Kingdom. Medecine sciences 2019: M/S, 35(8-9), 611.
 
Morales HE, Faria R, Johannesson K, Larsson T, Panova M, Westram AM, Butlin JK. (2019) Genomic architecture of parallel ecological divergence: beyond a single environmental contrast. Science Advances 5, eaav9963.
 
Murphy, J. C., Braswell, A. L., Charles, S. P., Auguste, R. J., Rivas, G. A., Borzee, A., Lehtinen, R. M., & Jowers, M. J. (2019). A new species of Erythrolamprus from the oceanic island of Tobago (Squamata, Dipsadidae). Zookeys(817), 131-157. 
 
Pereira JJ, Lopes EP, Carretero MÁ, Vasconcelos R (2019) Insular geckos provide experimental evidence on refuge selection priorities by ectotherms. Behavioural Processes,164: 260-267.
 
Pina-Cabral, LB; Carneiro, M; Criado, B; Esteves, PJ (2019). Maximum likelihood approach suggests positive selection in platelet integrin αIIbβ3 in mammalian species. Platelets 30:4, 460-466.
 
Pollet, M., Andrade, R., Gonçalves, A., Andrade, P., Jacinto, V., Almeida, J., & Brosens, D. (2019). Dipterological surveys in Portugal unveil 200 species of long-legged flies, with over 170 new to the country (Diptera: Dolichopodidae). Zootaxa 4649 (1): 1-69.
 
R. da Fonseca, R.; Ureña, I.; Afonso, S.; Pires, AE.; Jørsboe, E.; Chikhi, L.; Ginja, C. (2019) Consequences of breed formation on patterns of genomic diversity and differentiation: The case of highly diverse peripheral Iberian cattle. BMC Genomics 20, 334.
 
Rodrigues, T. M., Andrade, P., Vidal, M., Boschert, M., Gonçalves, D., & Domínguez, J. (2019). No genetic differentiation, but less diversity, in the Iberian breeding population of the Eurasian Curlew (Numenius arquata). Journal of Ornithology, 160(1), 17-25.
 
Santarém F, Pereira P, Saarinen J, Brito JC (2019) New method to identify and map flagship fleets for promoting conservation and ecotourism. Biological Conservation, 229: 113-124. 
 
Santarém, F.; Pereira, P.; Saarinen, J.; Brito, JC. (2019). New method to identify and map flagship fleets for promoting conservation and ecotourism. Biological Conservation, 229: 113-124.
 
Taillebois, L.; Sabatino, S.; Manicki, A.; Daverat, F.; Nachón, DJ.; Lepais, O. (2019). Variable outcomes of hybridization between declining Alosa alosa and Alosa fallax. Evolutionary Applications 13, 636-651.
 
Tamar, K., Simo-Riudalbas, M., Garcia-Porta, J., Santos, X., Llorente, G., Vasconcelos, R., & Carranza, S. (2019). An integrative study of island diversification: Insights from the endemic Haemodracon geckos of the Socotra Archipelago. Molecular Phylogenetics and Evolution, 133, 166-175.
 
Vasconcelos, T., Araujo, F., Lopes, C., Loureiro, A., das Neves, J., Marques, S., & Sarmento, B. (2019). Multicomponent self nano emulsifying delivery systems of resveratrol with enhanced pharmacokinetics profile. European Journal of Pharmaceutical Sciences, 137, 12.
 
Vassalo, A. R., Mamede, A. P., Ferreira, M. T., Cunha, E., & Goncalves, D. (2019). The G-force awakens: the influence of gravity in bone heat-induced warping and its implications for the estimation of the pre-burning condition of human remains. Australian Journal of Forensic Sciences, 51(2), 201-208.