Jones MR, Mills LS, Alves PC, Callahan CM, Alves JM, Lafferty DJR, Jiggins FM, Jensen JD, Melo-Ferreira J, Good JM (2018) Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares. Science, 360(6395): 1355-1358.

(doi: 10.1126/science.aar5273)

Longdon B, Day JP, Alves JM, Smith SCL, Houslay TM, McGonigle JE, Tagliaferri L, Jiggins FM (2018) Host shifts result in parallel genetic changes when viruses evolve in closely related species. PLOS Pathogens, 14(4).

(doi: 10.1371/journal.ppat.1006951)

Crawford JE, Alves JM, Palmer WJ, Day JP, Sylla M, Ramasamy R, Surendran SN, Black WC, Pain A, Jiggins FM (2017) Population genomics reveals that an anthropophilic population of Aedes aegypti mosquitoes in West Africa recently gave rise to American and Asian populations of this major disease vector. BMC Biology, 15: 16.

(doi: 10.1186/s12915-017-0351-0)

Alves JM, Carneiro M, Afonso S, Lopes S, Garreau H, Boucher S, Allain D, Queney G, Esteves PJ, Bolet G, Ferrand N (2015) Levels and patterns of genetic diversity and population structure in domestic rabbits. PLOS ONE, 10(12): e0144687.

(doi: 10.1371/journal.pone.0144687)

Carneiro M, Piorno V, Carl-Johan R, Alves J, Ferrand N, Alves PC, Anderson L (2015) Candidate genes underlying heritable differences in reproductive seasonality between wild and domestic rabbits. Animal Genetics, 46(4): 418–425.

(doi: 10.1111/age.12299)

Carneiro M, Rubin CJ, Di Palma F, Albert FW, Alfoldi J, Barrio AM, Pielberg G, Rafati N, Sayyab S, Turner-Maier J, Younis S, Afonso S, Aken B, Alves JM, Barrell D, Bolet G, Boucher S, Burbano HA, Campos R, Chang JL, Duranthon V, Fontanesi L, Garreau H, Heiman D, Johnson J, Mage RG, Peng Z, Queney G, Rogel-Gaillard C, Ruffier M, Searle S, Villafuerte R, Xiong A, Young S, Forsberg-Nilsson K, Good JM, Lander ES, Ferrand N, Lindblad-Toh K, Andersson L (2014) Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication. Science (New York, N. Y. ), 345 (6200): 1074-1079.

(doi: 10.1126/science.1253714)