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(doi: 10.3389/fpls.2016.01036)

Gonzalez-Plaza JJ, Ortiz-Martin I, Munoz-Merida A, Garcia-Lopez C, Sanchez-Sevilla JF, Luque F, Trelles O, Bejarano ER, De La Rosa R, Valpuesta V, Beuzon CR (2016) Transcriptomic Analysis Using Olive Varieties and Breeding Progenies Identifies Candidate Genes Involved in Plant Architecture. Frontiers in Plant Science, 7:240.

(doi: 10.3389/fpls.2016.00240)

García-López MC, Vidoy I, Jiménez-Ruiz J, Muñoz-Mérida A, Fernández-Ocaña A, de la Rosa R, Bautista Barroso J, Navarro F, Trelles O, Beuzón CR, Barceló A, Valpuesta V, Luque F (2014) Genetic changes involved in the juvenile-to-adult transition in the shoot apex of Olea europaea L. occur years before the first flowering. Tree Genetics & Genomes, 10(3):585-603.

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Leyva-Pérez MD, Valverde-Corredor A, Valderrama R, Jiménez-Ruiz J, Muñoz-Merida A, Trelles O, Barroso JB, Mercado-Blanco J, Luque F (2014) Early and delayed long-term transcriptional changes and short-term transient responses during cold acclimation in olive leaves. DNA Research, 22 (1): 1-11.

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Muñoz-Mérida A, Viguera E, Claros MG, Trelles O, Pérez-Pulido AJ (2014) Sma3s: a three-step modular annotator for large sequence datasets. DNA Research, 21(4):341-353.

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De la Rosa R, Belaj A, Muñoz-Mérida A, Trelles O, Ortíz-Martín I, González-Plaza JJ, Valpuesta V, Beuzón CR (2013) Development of EST-derived SSR markers with long-core repeat in olive and their use for paternity testing. Journal of the American Society for Horticultural Science, 138(4): 290-296.

(Link: http://journal.ashspublications.org/content/138/4/290.full)

Muñoz-Mérida A, González-Plaza JJ, Cañada A, Blanco AM, García-López Mdel C, Rodríguez JM, Pedrola L, Sicardo MD, Hernández ML, De la Rosa R, Belaj A, Gil-Borja M, Luque F, Martínez-Rivas JM, Pisano DG, Trelles O, Valpuesta V, Beuzón CR (2013) De novo assembly and functional annotation of the olive (Olea europaea) transcriptome. DNA Research, 20(1):93-108.

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Lima-Silva V, Rosado A, Amorim-Silva V, Muñoz-Mérida A, Pons C, Bombarely A, Trelles O, Fernández-Muñoz R, Granell A, Valpuesta V, Botella MÁ (2012) Genetic and genome-wide transcriptomic analyses identify co-regulation of oxidative response and hormone transcript abundance with vitamin C content in tomato fruit. BMC Genomics, 13(1): 187.

(doi: 10.1186/1471-2164-13-187)

Muñoz-Mérida A, Perkins JR, Viguera E, Thode G, Bejarano ER, Pérez-Pulido AJ (2012) Semirna: searching for plant miRNAs using target sequences. OMICS-A Journal of Integrative Biology, 16(4):168-177.

(doi: 10.1089/omi.2011.0115)