Cookie Policy

This site uses cookies. When browsing the site, you are consenting its use. Learn more

I understood

Back to the List

John Archer

Principal Researcher

Publications

28 Publications

Linheiro, R., Archer, J. (2022). Quantification of the effects of chimerism on read mapping, differential expression and annotation following short-read de novo assembly. F1000Research, 11: 120. doi: 10.12688/f1000research.108489.1 Open publication

Linheiro, R., Sabatino, S., Lobo, D., & Archer, J. (2022). CView: A network based tool for enhanced alignment visualization. PLOS ONE, 17(6), e0259726. doi: 10.1371/journal.pone.0259726 Open publication

Lobo, D., Linheiro, R., Godinho, R., Archer, J.P. (2022). On taming the effect of transcript level intra-condition count variation during differential expression analysis: A story of dogs, foxes and wolves. PLOS ONE 17(9): e0274591. doi: 10.1371/journal.pone.0274591 Open publication

Sabatino, S. J., Pereira, P., Carneiro, M., Dilytė, J., Archer, J. P., Munoz, A., Nonnis-Marzano, F., & Murias, A. (2022). The genetics of adaptation in freshwater Eurasian shad (Alosa). Ecology and Evolution, 12(5), e8908. doi: 10.1002/ece3.8908 Open publication

Linheiro, R., Archer, J. (2021). CStone: A de novo transcriptome assembler for short-read data that identifies non-chimeric contigs based on underlying graph structure. PLOS Comput Biol., 17: e1009631. doi: 10.1371/journal.pcbi.1009631 Open publication

Vonk, F. J., Bittenbinder, M. A., Kerkkamp, H. M. I., Grashof, D. G. B., Archer, J. P., Afonso, S., Richardson, M. K., Kool, J., & van der Meijden, A. (2021). A non-lethal method for studying scorpion venom gland transcriptomes, with a review of potentially suitable taxa to which it can be applied. PLOS ONE, 16(11), e0258712. doi: 10.1371/journal.pone.0258712 Open publication

Cardoso, G. C., Abreu, J. M., Archer, J., Crottini, A., & Mota, P. G. (2020). Independent evolution of song diversity and song motor performance in canaries, goldfinches and allies indicates clade-specific trade-offs in birdsong. Evolution, 74(6), 1170–1185 doi: 10.1111/EVO.13987 Open publication

Grashof, DGB.; Kerkkamp, HMI.; Afonso, S.; Archer, J.; Harris, DJ.; Richardson, MK.; Vonk, FJ.; van der Meijden, A. (2019). Transcriptome annotation and characterization of novel toxins in six scorpion species. BMC Genomics 20, 645. doi: 10.1186/s12864-019-6013-6 Open publication

Gazda MA, Andrade P, Afonso S, Dilytė J, Archer J, Lopes RJ, Faria R, Carneiro M (2018) Signatures of Selection on Standing Genetic Variation Underlie Athletic and Navigational Performance in Racing Pigeons. Molecular Biology and Evolution, 35(5):1176–1189 doi: 10.1093/molbev/msy030 Open publication

Carneiro M, Hu D, Archer J, Feng C, Afonso S, Chen C, Blanco-Aguilar JA, Garreau H, Boucher S, Ferreira PG, Ferrand N, Rubin CJ, Andersson L (2017) Dwarfism and Altered Craniofacial Development in Rabbits Is Caused by a 12.1 kb Deletion at the HMGA2 Locus. Genetics. doi: 10.1534/genetics.116.196667 Open publication

View Details View Projects

Copyright © 2024 Cibio